Lacto-usp RNA motif

Lacto-usp RNA
Consensus secondary structure of Lacto-usp RNAs
Identifiers
Symbol Lacto-usp RNA
Rfam RF01710
Other data
RNA type sRNA
Domain(s) Lactic acid bacteria

The Lacto-usp RNA motif is a conserved RNA structure identified in bacteria by bioinformatics.[1] Lacto-usp RNAs are found exclusively in lactic acid bacteria, and exclusively in the possible 5' untranslated regions of (5' UTRs) operons that contain a hypothetical gene and a usp gene. The usp gene encodes the universal stress protein. It was proposed that the Lacto-usp might correspond to the 6S RNA of the relevant species, because four of five of these species lack a predicted 6S RNA, and 6S RNAs commonly occur in 5' UTRs of usp genes. However, given that the Lacto-usp RNA motif is much shorter than the standard 6S RNA structure, the function of Lacto-usp RNAs remains unclear.

References

  1. Weinberg Z, Wang JX, Bogue J, et al. (March 2010). "Comparative genomics reveals 104 candidate structured RNAs from bacteria, archaea and their metagenomes". Genome Biol. 11 (3): R31. doi:10.1186/gb-2010-11-3-r31. PMC 2864571Freely accessible. PMID 20230605.

External links

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