Spinal Cord Toolbox
| Developer(s) | NeuroPoly |
|---|---|
| Stable release |
2.2.3
/ 4 February 2016 |
| Preview release |
3.0 beta27
/ 23 October 2016 |
| Written in | Python |
| Operating system | Linux, Mac OS X |
| Size | 140MB |
| Available in | English |
| Type | Scientific visualization and image computing |
| License | MIT Licence |
| Website |
github |
The Spinal Cord Toolbox (SCT) [1] is a suite of analysis tools optimized for spinal cord images acquired with magnetic resonance imaging. Main features include segmentation, registration and calculation of anatomical metrics.
Main Features
- Propseg Automatic spinal cord segmentation.[2]
- The MNI-Poly-AMU template is an anatomical template of the spinal cord with T2 weighting including segmentation of white matter, gray matter, CSF.[3] The template also include segmentation of spinal levels for automatic assessment of metrics at specific locations.[4]
- A White Matter atlas including 29 partial volume masks of which matter tracts.[5]
References
- ↑ De Leener B, Levy S, Dupont SM, Fonov VS, Stikov N, Louis Collins D, Callot V, Cohen-Adad J. SCT: Spinal Cord Toolbox, an open-source software for processing spinal cord MRI data. Neuroimage 2016. DOI: 10.1016/j.neuroimage.2016.10.009
- ↑ De Leener B, Cohen-Adad J, Kadoury S. Automatic segmentation of the spinal cord and spinal canal coupled with vertebral labeling. Medical Imaging, IEEE Transactions on (in press). DOI: 10.1109/TMI.2015.2437192
- ↑ Fonov V, Le Troter A, Taso M, De Leener B, Leveque G, Benhamou M, Sdika M, Benali H, Pradat PF, Collins DL, Callot V, Cohen-Adad J. Framework for integrated MRI average of the spinal cord white and gray matter: The MNI-Poly-AMU template. Neuroimage 2014. DOI: 10.1016/j.neuroimage.2014.08.057
- ↑ Cadotte DW, Cadotte A, Cohen-Adad J, Fleet D, Livne M, Mikulis D, Fehlings MG. Resolving the anatomic variability of the human cervical spinal cord: a solution to facilitate advanced neural imaging. Proceedings of the 22nd Annual Meeting of ISMRM, Milan, Italy 2014:1719.
- ↑ Benhamou M, Fonov V, Taso M, Le Troter A, Sdika M, Collins DL, Callot V, Cohen-Adad J. Atlas of white-matter tracts in the human spinal cord. Proceedings of the 22nd Annual Meeting of ISMRM, Milan, Italy 2014:0013.
External links
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